Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC778849Uncharacterized protein. (947 aa)    
Predicted Functional Partners:
nf45
NF45 protein isoform X1.
   
 0.941
H2XXY4_CIOIN
DZF domain-containing protein.
   
   0.615
F6PHN1_CIOIN
Protein kinase domain-containing protein.
    
 0.573
F6V2L0_CIOIN
Uncharacterized protein.
   
 
 0.549
F6QXU2_CIOIN
BTB domain-containing protein.
      
 0.534
LOC100186221
Uncharacterized protein.
     
 0.517
H2XU80_CIOIN
FERM domain-containing protein.
    
 
 0.516
F6WDS6_CIOIN
RRM domain-containing protein.
   
   0.499
F6ZE98_CIOIN
Uncharacterized protein.
    
 
 0.476
F6TAK3_CIOIN
PUM-HD domain-containing protein.
   
 
 0.428
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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