Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6TBV6_CIOINUncharacterized protein. (344 aa)    
Predicted Functional Partners:
H2XNI5_CIOIN
Ig-like domain-containing protein.
     
 0.683
H2XMA8_CIOIN
Uncharacterized protein.
    
 0.640
F6VM15_CIOIN
RanBP2-type domain-containing protein.
    
 0.542
F6ZSL1_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.532
H2XNJ4_CIOIN
BEACH domain-containing protein.
    
 0.532
H2XXG3_CIOIN
Uncharacterized protein.
    
 0.532
F6U4B7_CIOIN
Uncharacterized protein.
      
 0.514
F6VBD0_CIOIN
Uncharacterized protein.
      
 0.494
F7AKV8_CIOIN
DH domain-containing protein.
    
 0.494
ikk-epsilon
ikappaB kinase isoform X1.
    
 0.490
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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