LOC100186192 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100186192

Cysteine-rich hydrophobic domain-containing protein 2. (167 aa)

Predicted Functional Partners:

F6UMA7_CIOIN

0.838

F6TIZ3_CIOIN

0.828

F6UA38_CIOIN

0.742

F6RCH7_CIOIN

0.740

F6Y1X1_CIOIN

0.648

LOC100186662

0.639

gp130-like

0.517

F6PLQ2_CIOIN

0.516

F6SJH8_CIOIN

0.516

LOC100181735

0.510

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PLQ2_CIOIN	LOC100181735	ENSCINP00000009884	ENSCINP00000025762	Uncharacterized protein; Belongs to the MAGUK family.	wiskott-Aldrich syndrome protein family member 3-like.	0.656
F6PLQ2_CIOIN	LOC100186192	ENSCINP00000009884	ENSCINP00000010088	Uncharacterized protein; Belongs to the MAGUK family.	Cysteine-rich hydrophobic domain-containing protein 2.	0.516
F6RCH7_CIOIN	LOC100186192	ENSCINP00000018308	ENSCINP00000010088	Uncharacterized protein.	Cysteine-rich hydrophobic domain-containing protein 2.	0.740
F6SJH8_CIOIN	LOC100186192	ENSCINP00000015757	ENSCINP00000010088	S1 motif domain-containing protein.	Cysteine-rich hydrophobic domain-containing protein 2.	0.516
F6TIZ3_CIOIN	F6UMA7_CIOIN	ENSCINP00000007773	ENSCINP00000015165	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	PID domain-containing protein.	0.856
F6TIZ3_CIOIN	F6Y1X1_CIOIN	ENSCINP00000007773	ENSCINP00000011713	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the CD36 family.	0.602
F6TIZ3_CIOIN	LOC100186192	ENSCINP00000007773	ENSCINP00000010088	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Cysteine-rich hydrophobic domain-containing protein 2.	0.828
F6UA38_CIOIN	LOC100186192	ENSCINP00000007143	ENSCINP00000010088	Fip1 domain-containing protein.	Cysteine-rich hydrophobic domain-containing protein 2.	0.742
F6UMA7_CIOIN	F6TIZ3_CIOIN	ENSCINP00000015165	ENSCINP00000007773	PID domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.856
F6UMA7_CIOIN	F6Y1X1_CIOIN	ENSCINP00000015165	ENSCINP00000011713	PID domain-containing protein.	Uncharacterized protein; Belongs to the CD36 family.	0.614
F6UMA7_CIOIN	LOC100186192	ENSCINP00000015165	ENSCINP00000010088	PID domain-containing protein.	Cysteine-rich hydrophobic domain-containing protein 2.	0.838
F6UMA7_CIOIN	gp130-like	ENSCINP00000015165	ENSCINP00000016593	PID domain-containing protein.	Uncharacterized protein.	0.510
F6Y1X1_CIOIN	F6TIZ3_CIOIN	ENSCINP00000011713	ENSCINP00000007773	Uncharacterized protein; Belongs to the CD36 family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.602
F6Y1X1_CIOIN	F6UMA7_CIOIN	ENSCINP00000011713	ENSCINP00000015165	Uncharacterized protein; Belongs to the CD36 family.	PID domain-containing protein.	0.614
F6Y1X1_CIOIN	LOC100186192	ENSCINP00000011713	ENSCINP00000010088	Uncharacterized protein; Belongs to the CD36 family.	Cysteine-rich hydrophobic domain-containing protein 2.	0.648
LOC100181735	F6PLQ2_CIOIN	ENSCINP00000025762	ENSCINP00000009884	wiskott-Aldrich syndrome protein family member 3-like.	Uncharacterized protein; Belongs to the MAGUK family.	0.656
LOC100181735	LOC100186192	ENSCINP00000025762	ENSCINP00000010088	wiskott-Aldrich syndrome protein family member 3-like.	Cysteine-rich hydrophobic domain-containing protein 2.	0.510
LOC100186192	F6PLQ2_CIOIN	ENSCINP00000010088	ENSCINP00000009884	Cysteine-rich hydrophobic domain-containing protein 2.	Uncharacterized protein; Belongs to the MAGUK family.	0.516
LOC100186192	F6RCH7_CIOIN	ENSCINP00000010088	ENSCINP00000018308	Cysteine-rich hydrophobic domain-containing protein 2.	Uncharacterized protein.	0.740
LOC100186192	F6SJH8_CIOIN	ENSCINP00000010088	ENSCINP00000015757	Cysteine-rich hydrophobic domain-containing protein 2.	S1 motif domain-containing protein.	0.516