Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185384ubiquitin-60S ribosomal protein L40. (128 aa)    
Predicted Functional Partners:
LOC100186361
60S ribosomal protein L6.
   
 0.999
LOC100181712
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.999
LOC100177158
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.999
F6YMZ5_CIOIN
Uncharacterized protein.
   
 0.999
LOC100183019
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 0.999
LOC100177507
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 0.999
F6TJY9_CIOIN
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.999
LOC100180640
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.999
LOC100175749
60S ribosomal protein L26.
   
 0.999
F6WJQ0_CIOIN
Ribosomal_L16 domain-containing protein.
   
 0.999
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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