STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6TX28_CIOINUbiquitin-like domain-containing protein. (114 aa)    
Predicted Functional Partners:
LOC100178367
Small ubiquitin-related modifier.
      
 0.699
LOC100175055
Ubiquitin-fold modifier 1; Ubiquitin-like modifier.
      
 0.652
LOC100176246
Ubiquitin-like domain-containing protein.
      
 0.648
F6U5W6_CIOIN
Uncharacterized protein.
      
 0.429
F6YGJ1_CIOIN
ThiF domain-containing protein.
      
 0.407
F6W9U2_CIOIN
Rad60-SLD domain-containing protein.
      
 0.402
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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