Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mycTranscription factor protein isoform X1. (681 aa)    
Predicted Functional Partners:
H2XYB1_CIOIN
Uncharacterized protein.
   
 
 0.633
F6YVN9_CIOIN
Ubiquitin carboxyl-terminal hydrolase.
    
 0.572
F6S8F6_CIOIN
Chromo domain-containing protein.
    
 0.531
H2XVL0_CIOIN
Uncharacterized protein.
    
 0.531
F6SPZ6_CIOIN
HDAC_interact domain-containing protein.
    
 
 0.517
dp-1
Uncharacterized protein.
   
 0.513
F6Y6H6_CIOIN
BZIP domain-containing protein.
     
 0.508
F6SFQ0_CIOIN
Uncharacterized protein.
   
  0.499
F6Z4E3_CIOIN
BHLH domain-containing protein.
      
 0.498
jun
Transcription factor protein.
   
 0.498
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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