LOC100182206 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100182206

Transmembrane protein 41B isoform X1. (433 aa)

Predicted Functional Partners:

H2XRZ5_CIOIN

0.838

LOC100180764

0.759

F6TCX3_CIOIN

0.744

F6ZN43_CIOIN

0.733

LOC100177468

0.681

LOC100186495

0.638

LOC100184867

0.623

LOC100176441

0.568

F6QZY3_CIOIN

0.567

LOC100184495

0.567

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QZY3_CIOIN	LOC100182206	ENSCINP00000004866	ENSCINP00000010397	Uncharacterized protein.	Transmembrane protein 41B isoform X1.	0.567
F6TCX3_CIOIN	F6ZN43_CIOIN	ENSCINP00000025655	ENSCINP00000006950	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.935
F6TCX3_CIOIN	LOC100182206	ENSCINP00000025655	ENSCINP00000010397	Uncharacterized protein.	Transmembrane protein 41B isoform X1.	0.744
F6ZN43_CIOIN	F6TCX3_CIOIN	ENSCINP00000006950	ENSCINP00000025655	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.935
F6ZN43_CIOIN	LOC100182206	ENSCINP00000006950	ENSCINP00000010397	WD_REPEATS_REGION domain-containing protein.	Transmembrane protein 41B isoform X1.	0.733
H2XRZ5_CIOIN	LOC100176441	ENSCINP00000032429	ENSCINP00000012269	Uncharacterized protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.568
H2XRZ5_CIOIN	LOC100180764	ENSCINP00000032429	ENSCINP00000017660	Uncharacterized protein.	Uncharacterized protein.	0.840
H2XRZ5_CIOIN	LOC100182206	ENSCINP00000032429	ENSCINP00000010397	Uncharacterized protein.	Transmembrane protein 41B isoform X1.	0.838
H2XRZ5_CIOIN	LOC100184495	ENSCINP00000032429	ENSCINP00000034554	Uncharacterized protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.567
LOC100176441	H2XRZ5_CIOIN	ENSCINP00000012269	ENSCINP00000032429	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.568
LOC100176441	LOC100182206	ENSCINP00000012269	ENSCINP00000010397	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Transmembrane protein 41B isoform X1.	0.568
LOC100176441	LOC100184495	ENSCINP00000012269	ENSCINP00000034554	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.999
LOC100177468	LOC100182206	ENSCINP00000011463	ENSCINP00000010397	UPF0692 protein C19orf54 homolog.	Transmembrane protein 41B isoform X1.	0.681
LOC100180764	H2XRZ5_CIOIN	ENSCINP00000017660	ENSCINP00000032429	Uncharacterized protein.	Uncharacterized protein.	0.840
LOC100180764	LOC100182206	ENSCINP00000017660	ENSCINP00000010397	Uncharacterized protein.	Transmembrane protein 41B isoform X1.	0.759
LOC100182206	F6QZY3_CIOIN	ENSCINP00000010397	ENSCINP00000004866	Transmembrane protein 41B isoform X1.	Uncharacterized protein.	0.567
LOC100182206	F6TCX3_CIOIN	ENSCINP00000010397	ENSCINP00000025655	Transmembrane protein 41B isoform X1.	Uncharacterized protein.	0.744
LOC100182206	F6ZN43_CIOIN	ENSCINP00000010397	ENSCINP00000006950	Transmembrane protein 41B isoform X1.	WD_REPEATS_REGION domain-containing protein.	0.733
LOC100182206	H2XRZ5_CIOIN	ENSCINP00000010397	ENSCINP00000032429	Transmembrane protein 41B isoform X1.	Uncharacterized protein.	0.838
LOC100182206	LOC100176441	ENSCINP00000010397	ENSCINP00000012269	Transmembrane protein 41B isoform X1.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.568