Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6ZL99_CIOINUtp12 domain-containing protein. (238 aa)    
Predicted Functional Partners:
F6WWW4_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.993
H2XTN0_CIOIN
Uncharacterized protein.
   
 0.990
LOC100186454
Uncharacterized protein.
   
 0.987
LOC100184042
Uncharacterized protein.
   
 0.985
LOC100183259
Uncharacterized protein.
   
 0.984
LOC100180054
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.979
LOC100175516
Uncharacterized protein.
   
 0.972
LOC100185508
WD repeat-containing protein 43.
   
 0.971
F6QDE3_CIOIN
Bms1-type G domain-containing protein.
   
 0.968
F7BQ53_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.965
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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