Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6WJV4_CIOINUncharacterized protein. (879 aa)    
Predicted Functional Partners:
swi/snf
Ci-SWI/SNF protein.
   
 0.913
F6VYS8_CIOIN
Uncharacterized protein.
 
      0.900
cbf-2
Transcription factor CBF/NF-Y/archaeal histone -2.
    
 
 0.880
LOC100184966
Histone H2B-like; Belongs to the histone H2B family.
    
 0.658
LOC100175631
Histone H2A; Belongs to the histone H2A family.
    
 0.583
F6ZFK4_CIOIN
Uncharacterized protein.
   
 0.570
H2XJH1_CIOIN
Uncharacterized protein.
   
 0.570
rfx1/2/3
RFX-type winged-helix domain-containing protein.
    
 
 0.515
H2XP71_CIOIN
Bromo domain-containing protein.
    
 0.515
F6ZIF8_CIOIN
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.507
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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