Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185398Actin-like protein 6B; Belongs to the actin family. (423 aa)    
Predicted Functional Partners:
F6UK15_CIOIN
SWIB domain-containing protein.
   
 0.999
LOC100183367
RuvB-like helicase; Belongs to the RuvB family.
   
 0.999
F6XT34_CIOIN
HMG box domain-containing protein.
   
 0.999
F6PHE6_CIOIN
Uncharacterized protein.
   
 0.998
H2XVM9_CIOIN
Uncharacterized protein.
   
 0.998
LOC100177411
RuvB-like helicase; Belongs to the RuvB family.
   
 0.997
F6U2A4_CIOIN
BAF250_C domain-containing protein.
    
 0.996
F6PHR7_CIOIN
Uncharacterized protein.
   
 0.996
LOC100185254
Chromatin modification-related protein MEAF6-like isoform X2.
    
 0.995
LOC100183508
MRG/MORF4L-binding protein-like.
    
 0.989
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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