Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC104265388Sarcalumenin-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (460 aa)    
Predicted Functional Partners:
smyd1
Uncharacterized protein.
   
  
 0.860
F6Z781_CIOIN
Calreticulin.
      
 0.663
F6Z6P7_CIOIN
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 
 0.630
H2XYH8_CIOIN
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 
 0.630
F6Q8V1_CIOIN
FYVE-type domain-containing protein.
    
 0.570
H2XZ06_CIOIN
Uncharacterized protein.
    
 0.570
F6SI87_CIOIN
TPR_REGION domain-containing protein.
   
  
 0.544
H2XSF3_CIOIN
Uncharacterized protein.
   
  
 0.542
F7BIB7_CIOIN
Protein kinase domain-containing protein.
   
  
 0.495
F6X229_CIOIN
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
   
 
 0.492
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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