STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6YHQ3_CIOINzf-RING-like domain-containing protein. (257 aa)    
Predicted Functional Partners:
F7AE79_CIOIN
SP-RING-type domain-containing protein.
    
 0.999
F6T8A4_CIOIN
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.999
LOC100181789
AAA_23 domain-containing protein.
    
 0.999
H2XL64_CIOIN
SMC_N domain-containing protein.
    
 0.999
LOC100181542
Non-structural maintenance of chromosomes element 3 homolog isoform X1.
   
 0.998
F6WUJ1_CIOIN
Structural maintenance of chromosomes protein.
    
 0.812
F6SH99_CIOIN
SMC hinge domain-containing protein.
    
 0.726
H2XTK5_CIOIN
SMC_N domain-containing protein.
    
 0.726
H2Y1G6_CIOIN
SMC_N domain-containing protein.
    
 0.726
LOC100180482
Structural maintenance of chromosomes protein.
    
 0.711
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.