STRINGSTRING
LOC778534 protein (Ciona intestinalis) - STRING interaction network
"LOC778534" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC778534Transcription factor protein (298 aa)    
Predicted Functional Partners:
e12/e47
Transcription factor protein (641 aa)
       
 
  0.962
n
Notch precursor (2549 aa)
       
 
  0.574
phox2
Homeodomain protein Phox2 (154 aa)
       
 
  0.511
ENSCING00000005021
Transcription factor protein (333 aa)
       
  0.507
ENSCING00000003929
Transcription factor protein (522 aa)
       
  0.507
atonal
Uncharacterized protein (96 aa)
     
 
  0.458
neurogenin
Transcription factor protein (409 aa)
           
  0.438
LOC778542
Transcription factor protein (378 aa)
           
  0.422
soxB1
HMG transcription factor SoxB1 (414 aa)
           
  0.410
ENSCING00000004186
Uncharacterized protein (475 aa)
       
 
  0.401
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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