Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100186909Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (389 aa)    
Predicted Functional Partners:
H2Y0H5_CIOIN
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
  
  
 
0.901
H2XP77_CIOIN
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
   
 0.891
LOC104266675
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
   
 0.813
F6W8X6_CIOIN
Uncharacterized protein.
   
 0.787
F6WXG6_CIOIN
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.710
F6Z3D0_CIOIN
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.709
F6SWJ9_CIOIN
Uncharacterized protein.
   
 
 0.642
LOC100187119
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.626
LOC100179909
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.626
LOC100176092
Cathepsin L1-like isoform X3; Belongs to the peptidase C1 family.
   
 0.626
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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