STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176751UV radiation resistance associated protein. (760 aa)    
Predicted Functional Partners:
F7ADE5_CIOIN
APG6 domain-containing protein.
    
 0.998
H2XJF2_CIOIN
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.990
LOC100186582
Phosphoinositide 3-kinase regulatory subunit 4.
    
 0.988
F6V899_CIOIN
Uncharacterized protein.
   
 0.952
LOC100186367
Gamma-aminobutyric acid receptor-associated protein.
     
 0.769
LOC100182401
Beclin 1-associated autophagy-related key regulator.
   
 
 0.649
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 
 0.648
F7BL69_CIOIN
WD_REPEATS_REGION domain-containing protein.
      
 0.642
LOC101242365
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.642
F6SZ37_CIOIN
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.630
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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