LOC100181174 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100181174

Uncharacterized protein. (403 aa)

Predicted Functional Partners:

F6TT30_CIOIN

0.971

F7BJC2_CIOIN

0.970

LOC100177202

0.941

F6XHJ8_CIOIN

0.933

F6SLD6_CIOIN

0.926

H2XWF2_CIOIN

0.926

Sir2-d

0.921

LOC100185251-2

0.921

LOC100185848

0.921

LOC778889

0.921

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SLD6_CIOIN	F6TT30_CIOIN	ENSCINP00000027486	ENSCINP00000024093	Deacetylase sirtuin-type domain-containing protein.	CTP_transf_like domain-containing protein.	0.922
F6SLD6_CIOIN	F6XHJ8_CIOIN	ENSCINP00000027486	ENSCINP00000021920	Deacetylase sirtuin-type domain-containing protein.	NUC domain-containing protein.	0.900
F6SLD6_CIOIN	F7BJC2_CIOIN	ENSCINP00000027486	ENSCINP00000017941	Deacetylase sirtuin-type domain-containing protein.	Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.	0.944
F6SLD6_CIOIN	LOC100177202	ENSCINP00000027486	ENSCINP00000016569	Deacetylase sirtuin-type domain-containing protein.	Uncharacterized protein.	0.900
F6SLD6_CIOIN	LOC100181174	ENSCINP00000027486	ENSCINP00000010957	Deacetylase sirtuin-type domain-containing protein.	Uncharacterized protein.	0.926
F6SLD6_CIOIN	LOC100185251-2	ENSCINP00000027486	ENSCINP00000012226	Deacetylase sirtuin-type domain-containing protein.	Zinc finger protein.	0.541
F6SLD6_CIOIN	LOC100185848	ENSCINP00000027486	ENSCINP00000023359	Deacetylase sirtuin-type domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.724
F6SLD6_CIOIN	LOC778889	ENSCINP00000027486	ENSCINP00000027422	Deacetylase sirtuin-type domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.498
F6SLD6_CIOIN	Sir2-d	ENSCINP00000027486	ENSCINP00000002463	Deacetylase sirtuin-type domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.590
F6TT30_CIOIN	F6SLD6_CIOIN	ENSCINP00000024093	ENSCINP00000027486	CTP_transf_like domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.922
F6TT30_CIOIN	F6XHJ8_CIOIN	ENSCINP00000024093	ENSCINP00000021920	CTP_transf_like domain-containing protein.	NUC domain-containing protein.	0.902
F6TT30_CIOIN	F7BJC2_CIOIN	ENSCINP00000024093	ENSCINP00000017941	CTP_transf_like domain-containing protein.	Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.	0.991
F6TT30_CIOIN	H2XWF2_CIOIN	ENSCINP00000024093	ENSCINP00000033986	CTP_transf_like domain-containing protein.	NAD-dependent protein deacylase; NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo.	0.922
F6TT30_CIOIN	LOC100177202	ENSCINP00000024093	ENSCINP00000016569	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.902
F6TT30_CIOIN	LOC100181174	ENSCINP00000024093	ENSCINP00000010957	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.971
F6TT30_CIOIN	LOC100185251-2	ENSCINP00000024093	ENSCINP00000012226	CTP_transf_like domain-containing protein.	Zinc finger protein.	0.922
F6TT30_CIOIN	LOC100185848	ENSCINP00000024093	ENSCINP00000023359	CTP_transf_like domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.922
F6TT30_CIOIN	LOC778889	ENSCINP00000024093	ENSCINP00000027422	CTP_transf_like domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.922
F6TT30_CIOIN	Sir2-d	ENSCINP00000024093	ENSCINP00000002463	CTP_transf_like domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.922
F6XHJ8_CIOIN	F6SLD6_CIOIN	ENSCINP00000021920	ENSCINP00000027486	NUC domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.900