STRINGSTRING
meis protein (Ciona intestinalis) - STRING interaction network
"meis" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
meisTranscription factor protein (554 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
0.967
prep
Transcription factor protein (442 aa)
       
0.872
ENSCING00000023524
Uncharacterized protein (79 aa)
       
  0.695
pax6
Homeobox transcription factor Pax6 (497 aa)
       
 
  0.609
hoxa2
Gsx (349 aa)
       
  0.521
ipf1
Transcription factor (411 aa)
       
  0.518
ENSCING00000008022
Uncharacterized protein (1310 aa)
     
  0.482
smad2/3a
Smad2/3a protein (446 aa)
     
  0.468
smad2/3b
Smad2/3b protein (426 aa)
     
  0.468
smad1/5
Smad1/5 protein (344 aa)
     
  0.468
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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