Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6S6D2_CIOINUncharacterized protein. (589 aa)    
Predicted Functional Partners:
Ash2-like
B30.2/SPRY domain-containing protein.
    
 0.935
F6WY47_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.909
LOC100181112
WD_REPEATS_REGION domain-containing protein.
   
 0.907
F6S6C5_CIOIN
RRM domain-containing protein.
 
      0.899
Zf(cxxc)-2
CXXC-type domain-containing protein.
   
 0.895
F6Z7N3_CIOIN
Uncharacterized protein.
   
 0.836
LOC100176938
WD repeat-containing protein 5.
   
 0.818
F6TF50_CIOIN
Uncharacterized protein.
   
 0.790
H2XK62_CIOIN
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
   
 
 0.719
F6QH89_CIOIN
Uncharacterized protein.
   
 0.704
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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