Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6XEX3_CIOINAmidase domain-containing protein. (555 aa)    
Predicted Functional Partners:
F6TCH6_CIOIN
GatB_N domain-containing protein.
 
 0.901
F6T8P3_CIOIN
Uncharacterized protein.
  
 0.826
H2XL44_CIOIN
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.719
F6VGI1_CIOIN
Hydrolase_4 domain-containing protein.
   
 
 0.656
ciad70l24
Cannabinoid receptor isoform X1; Belongs to the G-protein coupled receptor 1 family.
      
 0.651
F6VUM2_CIOIN
Glutamine synthetase.
   
 0.566
F6T0F1_CIOIN
Uncharacterized protein.
  
 
 0.545
LOC100176897
Uncharacterized protein.
  
 
 0.539
F6UET6_CIOIN
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
  
 
 0.533
LOC100178564
MGS domain-containing protein.
  
 
 0.532
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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