Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100186910Uncharacterized protein. (297 aa)    
Predicted Functional Partners:
rl32
Uncharacterized protein.
 
      0.899
LOC100182071
E3 ubiquitin-protein ligase E3D isoform X1.
    
   0.739
LOC100184901
Uncharacterized protein.
 
 
  
 0.724
rhoc
RhoA protein.
    
 0.611
LOC100183137
Uncharacterized protein.
  
   0.608
H2XTJ5_CIOIN
FAD_binding_3 domain-containing protein.
 
   
  0.584
F6UVK0_CIOIN
Uncharacterized protein.
      
 0.572
LOC100182469
Uncharacterized protein CG5902.
  
    0.562
LOC100186285
Target of rapamycin complex subunit lst8.
 
      0.521
H2XQ68_CIOIN
Drf_GBD domain-containing protein.
     
 0.502
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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