F6XE75_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6XE75_CIOIN

Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (374 aa)

Predicted Functional Partners:

F6XP19_CIOIN

0.610

F7AS68_CIOIN

0.536

LOC100184547

0.536

K9J6P3_CIOIN

0.535

F6PV82_CIOIN

0.535

H2XPX5_CIOIN

0.533

H2Y2H3_CIOIN

0.532

F6RND3_CIOIN

0.531

H2XVR8_CIOIN

0.531

H2XP88_CIOIN

0.518

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PV82_CIOIN	F6XE75_CIOIN	ENSCINP00000025349	ENSCINP00000011499	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.535
F6PV82_CIOIN	F6XP19_CIOIN	ENSCINP00000025349	ENSCINP00000017459	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein.	0.472
F6PV82_CIOIN	F7AS68_CIOIN	ENSCINP00000025349	ENSCINP00000001756	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.531
F6PV82_CIOIN	H2XP88_CIOIN	ENSCINP00000025349	ENSCINP00000031471	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.474
F6PV82_CIOIN	K9J6P3_CIOIN	ENSCINP00000025349	ENSCINP00000001740	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.532
F6RND3_CIOIN	F6XE75_CIOIN	ENSCINP00000011923	ENSCINP00000011499	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.531
F6RND3_CIOIN	F7AS68_CIOIN	ENSCINP00000011923	ENSCINP00000001756	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.525
F6RND3_CIOIN	H2XP88_CIOIN	ENSCINP00000011923	ENSCINP00000031471	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.506
F6RND3_CIOIN	H2Y2H3_CIOIN	ENSCINP00000011923	ENSCINP00000036108	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein.	0.528
F6RND3_CIOIN	K9J6P3_CIOIN	ENSCINP00000011923	ENSCINP00000001740	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.525
F6RND3_CIOIN	LOC100184547	ENSCINP00000011923	ENSCINP00000001801	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.525
F6XE75_CIOIN	F6PV82_CIOIN	ENSCINP00000011499	ENSCINP00000025349	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein.	0.535
F6XE75_CIOIN	F6RND3_CIOIN	ENSCINP00000011499	ENSCINP00000011923	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein.	0.531
F6XE75_CIOIN	F6XP19_CIOIN	ENSCINP00000011499	ENSCINP00000017459	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein.	0.610
F6XE75_CIOIN	F7AS68_CIOIN	ENSCINP00000011499	ENSCINP00000001756	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.536
F6XE75_CIOIN	H2XP88_CIOIN	ENSCINP00000011499	ENSCINP00000031471	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.518
F6XE75_CIOIN	H2XPX5_CIOIN	ENSCINP00000011499	ENSCINP00000031709	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein.	0.533
F6XE75_CIOIN	H2XVR8_CIOIN	ENSCINP00000011499	ENSCINP00000033752	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein.	0.531
F6XE75_CIOIN	H2Y2H3_CIOIN	ENSCINP00000011499	ENSCINP00000036108	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein.	0.532
F6XE75_CIOIN	K9J6P3_CIOIN	ENSCINP00000011499	ENSCINP00000001740	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.535