Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7A983_CIOINUncharacterized protein. (187 aa)    
Predicted Functional Partners:
H2XSD2_CIOIN
Ribosomal_L7Ae domain-containing protein.
    
 0.913
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.880
F6WWT1_CIOIN
eIF2B_5 domain-containing protein.
   
 0.844
F7APB5_CIOIN
Uncharacterized protein.
     
 0.843
H2XYU7_CIOIN
Uncharacterized protein.
      
 0.838
LOC100176033
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.832
LOC100178161
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis.
      
 0.813
LOC100181712
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.805
H2Y0Q6_CIOIN
Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.
   
 0.799
F6U602_CIOIN
W2 domain-containing protein.
   
 0.798
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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