Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Y206_CIOINUncharacterized protein. (292 aa)    
Predicted Functional Partners:
F6SZQ5_CIOIN
J domain-containing protein.
    
 
 0.950
LOC100184910
cyclin-D-binding Myb-like transcription factor 1.
      
 0.743
F6RMZ6_CIOIN
Uncharacterized protein.
      
 0.742
LOC100177808
Uncharacterized protein.
      
 0.694
H2Y0M6_CIOIN
Uncharacterized protein.
      
 0.579
F6YAM0_CIOIN
Uncharacterized protein.
      
 0.554
F7BQ69_CIOIN
Uncharacterized protein.
      
 0.529
LOC104266474
POTRA domain-containing protein.
      
 0.511
LOC100176891
Gametocyte-specific factor 1 homolog.
      
 0.431
syn
Uncharacterized protein.
    
   0.427
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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