STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176070Mitotic spindle assembly checkpoint protein MAD1. (714 aa)    
Predicted Functional Partners:
H2XRK6_CIOIN
HORMA domain-containing protein.
    
 0.995
H2XWH9_CIOIN
Protein kinase domain-containing protein.
    
 0.964
F7B1X4_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.934
F6R4H7_CIOIN
Uncharacterized protein.
    
 
 0.892
LOC100186469
WD_REPEATS_REGION domain-containing protein.
    
 0.882
F6YW46_CIOIN
PDZ domain-containing protein.
   
 0.838
F6UNP2_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.838
LOC100176899
Protein kinase domain-containing protein.
    
 
 0.763
LOC100183428
Uncharacterized protein.
   
 
 0.659
F6R3V0_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.650
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.