Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F6Y1N2_CIOINPSP domain-containing protein. (626 aa)    
Predicted Functional Partners:
LOC100178056
Splicing factor 3B subunit 3 isoform X1.
   
 0.999
LOC100177970
Splicing factor 3B subunit 4-like.
   
 0.999
zf(matrin)-2
Zinc finger protein.
   
 0.999
F7AI93_CIOIN
Uncharacterized protein.
   
 0.999
LOC100178572
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.999
H2XJF1_CIOIN
SF3b1 domain-containing protein.
   
 0.998
LOC100181343
RRM domain-containing protein.
    
 0.998
LOC100180259
U2 small nuclear ribonucleoprotein A'-like.
   
 0.998
LOC100178781
Small nuclear ribonucleoprotein-associated protein B-like.
   
 0.997
H2XKA1_CIOIN
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.997
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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