Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6WQI3_CIOINS5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (385 aa)    
Predicted Functional Partners:
F6Q5I2_CIOIN
Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.
   
 0.999
F6TN93_CIOIN
Uncharacterized protein.
  
 0.999
F6Z599_CIOIN
Uncharacterized protein.
   
 0.999
F6PZ15_CIOIN
MRP-S28 domain-containing protein.
   
 0.999
LOC100178663
28S ribosomal protein S2, mitochondrial-like.
  
 0.999
LOC100175906
28S ribosomal protein S22, mitochondrial.
   
 0.999
LOC100178125
28S ribosomal protein S16, mitochondrial-like isoform X2.
   
 0.999
H2Y340_CIOIN
Uncharacterized protein.
  
 0.999
F6REV8_CIOIN
L51_S25_CI-B8 domain-containing protein.
   
 0.998
LOC100176113
28S ribosomal protein S18a, mitochondrial.
   
 0.998
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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