STRINGSTRING
upb1 protein (Ciona intestinalis) - STRING interaction network
"upb1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
upb1Uncharacterized protein (388 aa)    
Predicted Functional Partners:
dpys
Uncharacterized protein (544 aa)
   
 
  0.969
ENSCING00000002066
Uncharacterized protein (502 aa)
   
 
  0.929
dpyd
Uncharacterized protein (1024 aa)
   
 
  0.923
ENSCING00000007517
Uncharacterized protein (542 aa)
   
 
  0.916
ENSCING00000007300
Uncharacterized protein (522 aa)
   
 
  0.913
ENSCING00000021110
Uncharacterized protein (495 aa)
   
 
  0.912
ENSCING00000006472
Uncharacterized protein (827 aa)
   
 
  0.912
ENSCING00000024650
Aldehyde dehydrogenase (466 aa)
   
 
  0.912
ENSCING00000000550
Aldehyde dehydrogenase (475 aa)
   
 
  0.912
gad
Glutamate decarboxylase 1 (531 aa)
     
 
  0.903
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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