STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtnReticulon-like protein. (377 aa)    
Predicted Functional Partners:
LOC100176531
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 
    0.914
LOC100180959
Receptor expression-enhancing protein.
    
 
 0.799
LOC104266244
Vacuolar protein sorting-associated protein VTA1 homolog.
    
   0.750
LOC100179323
J domain-containing protein.
    
 
 0.673
LOC100180661
Endoplasmic reticulum junction formation protein lunapark-B.
    
 
 0.628
F6UVN7_CIOIN
Uncharacterized protein.
    
 
 0.627
F6ZXH0_CIOIN
Uncharacterized protein.
     
 0.586
LOC100180090
Receptor expression-enhancing protein.
   
 
 0.584
rhoc
RhoA protein.
    
 0.573
LOC100175466
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.569
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.