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rtn protein (Ciona intestinalis) - STRING interaction network
"rtn" - Reticulon in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtnReticulon (377 aa)    
Predicted Functional Partners:
ENSCING00000023026
Uncharacterized protein (496 aa)
       
      0.930
zf(fyve)-1
Zinc finger protein (402 aa)
       
 
  0.880
ENSCING00000019897
Uncharacterized protein (290 aa)
     
  0.784
ENSCING00000023366
Uncharacterized protein (514 aa)
     
  0.784
ENSCING00000023562
Uncharacterized protein (495 aa)
     
  0.784
ENSCING00000005461
Uncharacterized protein (255 aa)
       
      0.736
ENSCING00000022828
Uncharacterized protein (96 aa)
       
      0.736
ENSCING00000004454
Uncharacterized protein (441 aa)
       
      0.736
ENSCING00000002124
Uncharacterized protein (163 aa)
       
      0.736
ENSCING00000021128
Uncharacterized protein (112 aa)
       
      0.672
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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