STRINGSTRING
amt-2 protein (Ciona intestinalis) - STRING interaction network
"amt-2" - Ammonium transporter 2 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amt-2Ammonium transporter 2 (454 aa)    
Predicted Functional Partners:
rhag
Rh type A glycoprotein (410 aa)
     
   
  0.652
LOC445799
Rh type B glycoprotein (452 aa)
   
   
  0.649
LOC445729
Rh type C glycoprotein (452 aa)
   
   
  0.647
ENSCING00000009647
Glutamate dehydrogenase (443 aa)
         
  0.574
ENSCING00000007260
Glutamate dehydrogenase (505 aa)
         
  0.574
ENSCING00000005776
Glutamine synthetase (334 aa)
   
   
  0.550
ENSCING00000018963
Uncharacterized protein (356 aa)
       
 
  0.469
ENSCING00000000283
Uncharacterized protein (354 aa)
       
 
  0.469
gi1
G protein alpha subunit Gi (354 aa)
       
 
  0.469
ENSCING00000024338
Uncharacterized protein (119 aa)
       
 
  0.457
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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