Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6V7V1_CIOINUncharacterized protein. (513 aa)    
Predicted Functional Partners:
F7B9N2_CIOIN
Uncharacterized protein.
   
 
 0.925
Ci-ZF(PARP)-3
Zinc finger protein.
     
 0.905
LOC100186901
Poly [ADP-ribose] polymerase.
      
 0.583
H2XS48_CIOIN
TROVE domain-containing protein.
    
 
 0.579
H2Y3R0_CIOIN
Uncharacterized protein.
    
 
 0.579
F6QM85_CIOIN
Uncharacterized protein.
    
 0.554
H2XW90_CIOIN
Uncharacterized protein.
    
 0.554
LOC100179093
AAA domain-containing protein.
   
  0.526
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.523
zf(c2h2)-102
ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.
   
 
 0.523
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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