F6V6J6_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

F6V6J6_CIOIN

Uncharacterized protein. (574 aa)

Predicted Functional Partners:

F7B314_CIOIN

0.629

F6X0V6_CIOIN

0.617

LOC100182630

0.605

LOC100181294

0.604

LOC100179082

0.599

LOC100184954

0.597

LOC100184081

0.594

F7ANB6_CIOIN

0.590

LOC100184905

0.560

F6R854_CIOIN

0.516

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R854_CIOIN	F6V6J6_CIOIN	ENSCINP00000018320	ENSCINP00000012063	Uncharacterized protein.	Uncharacterized protein.	0.516
F6R854_CIOIN	F6X0V6_CIOIN	ENSCINP00000018320	ENSCINP00000017470	Uncharacterized protein.	Uncharacterized protein.	0.990
F6R854_CIOIN	F7ANB6_CIOIN	ENSCINP00000018320	ENSCINP00000008390	Uncharacterized protein.	Uncharacterized protein.	0.993
F6R854_CIOIN	F7B314_CIOIN	ENSCINP00000018320	ENSCINP00000005320	Uncharacterized protein.	Uncharacterized protein.	0.994
F6R854_CIOIN	LOC100179082	ENSCINP00000018320	ENSCINP00000032241	Uncharacterized protein.	Intraflagellar transport protein 22 homolog isoform X1.	0.907
F6R854_CIOIN	LOC100181294	ENSCINP00000018320	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.942
F6R854_CIOIN	LOC100182630	ENSCINP00000018320	ENSCINP00000008817	Uncharacterized protein.	Intraflagellar transport protein 81 homolog.	0.994
F6R854_CIOIN	LOC100184081	ENSCINP00000018320	ENSCINP00000027834	Uncharacterized protein.	Uncharacterized protein.	0.990
F6R854_CIOIN	LOC100184905	ENSCINP00000018320	ENSCINP00000008934	Uncharacterized protein.	TRAF3-interacting protein 1.	0.984
F6R854_CIOIN	LOC100184954	ENSCINP00000018320	ENSCINP00000018073	Uncharacterized protein.	Uncharacterized protein.	0.988
F6V6J6_CIOIN	F6R854_CIOIN	ENSCINP00000012063	ENSCINP00000018320	Uncharacterized protein.	Uncharacterized protein.	0.516
F6V6J6_CIOIN	F6X0V6_CIOIN	ENSCINP00000012063	ENSCINP00000017470	Uncharacterized protein.	Uncharacterized protein.	0.617
F6V6J6_CIOIN	F7ANB6_CIOIN	ENSCINP00000012063	ENSCINP00000008390	Uncharacterized protein.	Uncharacterized protein.	0.590
F6V6J6_CIOIN	F7B314_CIOIN	ENSCINP00000012063	ENSCINP00000005320	Uncharacterized protein.	Uncharacterized protein.	0.629
F6V6J6_CIOIN	LOC100179082	ENSCINP00000012063	ENSCINP00000032241	Uncharacterized protein.	Intraflagellar transport protein 22 homolog isoform X1.	0.599
F6V6J6_CIOIN	LOC100181294	ENSCINP00000012063	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.604
F6V6J6_CIOIN	LOC100182630	ENSCINP00000012063	ENSCINP00000008817	Uncharacterized protein.	Intraflagellar transport protein 81 homolog.	0.605
F6V6J6_CIOIN	LOC100184081	ENSCINP00000012063	ENSCINP00000027834	Uncharacterized protein.	Uncharacterized protein.	0.594
F6V6J6_CIOIN	LOC100184905	ENSCINP00000012063	ENSCINP00000008934	Uncharacterized protein.	TRAF3-interacting protein 1.	0.560
F6V6J6_CIOIN	LOC100184954	ENSCINP00000012063	ENSCINP00000018073	Uncharacterized protein.	Uncharacterized protein.	0.597