Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100183833Basal body-orientation factor 1-like. (508 aa)    
Predicted Functional Partners:
F6SG33_CIOIN
Uncharacterized protein; Belongs to the FGGY kinase family.
   
    0.886
LOC100178966
Uncharacterized protein.
    
 
 0.841
F6Z7A4_CIOIN
DUF4472 domain-containing protein.
    
 
 0.755
F6RIH8_CIOIN
Uncharacterized protein.
    
 
 0.704
LOC100179349
Integrator complex subunit 8-like.
    
 
 0.624
LOC100187492
DUF4201 domain-containing protein.
   
   0.572
F6R939_CIOIN
Uncharacterized protein.
      
 0.516
LOC100186925
F-box only protein 36-like.
      
 0.499
ciic3
Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity).
   
   0.463
LOC101242578
Caltractin.
   
 0.448
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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