Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100179723Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (657 aa)    
Predicted Functional Partners:
H2XWC1_CIOIN
GOLD domain-containing protein.
   
  
 0.851
F6Q2H6_CIOIN
Uncharacterized protein.
   
  
 0.755
LOC100175958
Uncharacterized protein.
      
 0.680
F6W0Q4_CIOIN
GDT1 family protein.
   
  
 0.634
H2XUX1_CIOIN
Uncharacterized protein.
      
 0.631
LOC100186615
Transmembrane emp24 domain-containing protein 1-like isoform X2.
      
 0.569
LOC100183174
Methyltransferase-like protein 13.
      
 0.562
hvcn1
Voltage-gated hydrogen channel 1; Mediates the voltage-dependent proton permeability of excitable membranes. Forms a proton-selective channel through which protons may pass in accordance with their electrochemical gradient (By similarity).
      
 0.539
F7A1T4_CIOIN
Uncharacterized protein.
      
 0.506
H2XN21_CIOIN
Uncharacterized protein.
      
 0.504
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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