STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100183475Cilia- and flagella-associated protein 36. (411 aa)    
Predicted Functional Partners:
LOC100176430
ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.918
LOC100187539
TFIIS N-terminal domain-containing protein.
      
 0.739
pf-rib
Protofilament ribbon protein.
      
 0.694
LOC100184622
TPR_REGION domain-containing protein.
      
 0.693
F6SF30_CIOIN
Uncharacterized protein.
      
 0.677
LOC100175361
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.671
F6RDQ7_CIOIN
Uncharacterized protein.
      
 0.639
H2XZZ5_CIOIN
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.639
F6Y3K6_CIOIN
Uncharacterized protein.
      
 0.620
ic5
DC2-related axonemal dynein intermediate chain 5.
      
 0.561
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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