Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6SH39_CIOINUncharacterized protein. (673 aa)    
Predicted Functional Partners:
zf(c2h2)-11
Uncharacterized protein.
    
 0.842
soxE
SoxE protein.
   
 0.841
LOC100179556
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.838
LOC100179576
CLP1_P domain-containing protein.
      
 0.828
LOC100181489
GLTP domain-containing protein.
      
 0.819
dsh
Dishevelled homolog.
    
 
 0.817
F6ZUV7_CIOIN
Mab-21 domain-containing protein.
   
  
 0.769
LOC100180734
Mitochondrial import inner membrane translocase subunit Tim22-like.
    
 0.766
snail
Uncharacterized protein.
     
 0.719
coup
Nuclear receptor.
    
 
 0.699
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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