STRINGSTRING
htatsf1 protein (Ciona intestinalis) - STRING interaction network
"htatsf1" - Ci-HTATSF1 protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htatsf1Ci-HTATSF1 protein; Uncharacterized protein (494 aa)    
Predicted Functional Partners:
sf3b1
Uncharacterized protein (898 aa)
     
 
  0.903
ENSCING00000023523
Uncharacterized protein (482 aa)
     
 
  0.903
ENSCING00000003319
Zinc finger protein (349 aa)
     
 
  0.805
ENSCING00000002709
Uncharacterized protein (686 aa)
     
 
  0.761
ENSCING00000003455
Uncharacterized protein (482 aa)
     
 
  0.688
ENSCING00000002730
Uncharacterized protein (502 aa)
     
 
  0.669
ENSCING00000006813
Uncharacterized protein (990 aa)
     
 
  0.606
ENSCING00000001837
Uncharacterized protein (450 aa)
     
 
  0.606
ENSCING00000004689
Uncharacterized protein (609 aa)
           
  0.534
supt5h
Uncharacterized protein (1047 aa)
     
 
  0.494
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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