Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC778641Ci-HTATSF1 protein. (494 aa)    
Predicted Functional Partners:
zf(matrin)-2
Zinc finger protein.
   
 0.995
LOC100180259
U2 small nuclear ribonucleoprotein A'-like.
    
 0.994
F6Y1N2_CIOIN
PSP domain-containing protein.
   
 0.983
LOC100178056
Splicing factor 3B subunit 3 isoform X1.
    
 0.982
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
     
 0.973
LOC100177970
Splicing factor 3B subunit 4-like.
    
 0.971
F7AI93_CIOIN
Uncharacterized protein.
   
 0.959
LOC100178781
Small nuclear ribonucleoprotein-associated protein B-like.
    
  0.936
H2XW02_CIOIN
Small nuclear ribonucleoprotein Sm D2.
    
 0.931
LOC100178572
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
     
 0.929
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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