STRINGSTRING
ci-sir2-e protein (Ciona intestinalis) - STRING interaction network
"ci-sir2-e" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ci-sir2-eUncharacterized protein; Zinc finger protein (339 aa)    
Predicted Functional Partners:
ENSCING00000008243
Uncharacterized protein ; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (1009 aa)
   
  0.761
ENSCING00000009202
Uncharacterized protein (489 aa)
   
   
  0.750
ENSCING00000015298
Uncharacterized protein (362 aa)
   
  0.748
Cin.52569
Histone deacetylase (404 aa)
   
  0.748
ENSCING00000002360
Histone deacetylase (430 aa)
   
  0.748
ENSCING00000008155
Uncharacterized protein (123 aa)
       
      0.674
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.645
ENSCING00000002850
Uncharacterized protein (2241 aa)
   
 
  0.607
ENSCING00000003432
Uncharacterized protein (1219 aa)
     
  0.586
ENSCING00000016005
Uncharacterized protein (292 aa)
   
  0.585
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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