LOC100186999 protein (Ciona intestinalis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

LOC100186999

Uncharacterized protein. (368 aa)

Predicted Functional Partners:

F6SF30_CIOIN

0.998

F7BBD1_CIOIN

0.998

F6UGN5_CIOIN

0.972

F6ZZH3_CIOIN

0.964

cnot7/8

0.942

F6S5I8_CIOIN

0.941

F6UNS0_CIOIN

0.932

F6U981_CIOIN

0.932

LOC100187049

0.813

SSRP1

0.746

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S5I8_CIOIN	F6SF30_CIOIN	ENSCINP00000009024	ENSCINP00000000705	Uncharacterized protein.	Uncharacterized protein.	0.947
F6S5I8_CIOIN	F6U981_CIOIN	ENSCINP00000009024	ENSCINP00000021731	Uncharacterized protein.	Uncharacterized protein.	0.963
F6S5I8_CIOIN	F6UGN5_CIOIN	ENSCINP00000009024	ENSCINP00000008830	Uncharacterized protein.	Uncharacterized protein.	0.996
F6S5I8_CIOIN	F6UNS0_CIOIN	ENSCINP00000009024	ENSCINP00000013958	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.963
F6S5I8_CIOIN	F6ZZH3_CIOIN	ENSCINP00000009024	ENSCINP00000000537	Uncharacterized protein.	Uncharacterized protein.	0.987
F6S5I8_CIOIN	F7BBD1_CIOIN	ENSCINP00000009024	ENSCINP00000018578	Uncharacterized protein.	Uncharacterized protein.	0.990
F6S5I8_CIOIN	LOC100186999	ENSCINP00000009024	ENSCINP00000012258	Uncharacterized protein.	Uncharacterized protein.	0.941
F6S5I8_CIOIN	LOC100187049	ENSCINP00000009024	ENSCINP00000014202	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.875
F6S5I8_CIOIN	SSRP1	ENSCINP00000009024	ENSCINP00000000932	Uncharacterized protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.563
F6S5I8_CIOIN	cnot7/8	ENSCINP00000009024	ENSCINP00000006096	Uncharacterized protein.	Ci-CNOT7/8 protein.	0.994
F6SF30_CIOIN	F6S5I8_CIOIN	ENSCINP00000000705	ENSCINP00000009024	Uncharacterized protein.	Uncharacterized protein.	0.947
F6SF30_CIOIN	F6U981_CIOIN	ENSCINP00000000705	ENSCINP00000021731	Uncharacterized protein.	Uncharacterized protein.	0.936
F6SF30_CIOIN	F6UGN5_CIOIN	ENSCINP00000000705	ENSCINP00000008830	Uncharacterized protein.	Uncharacterized protein.	0.961
F6SF30_CIOIN	F6UNS0_CIOIN	ENSCINP00000000705	ENSCINP00000013958	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.936
F6SF30_CIOIN	F6ZZH3_CIOIN	ENSCINP00000000705	ENSCINP00000000537	Uncharacterized protein.	Uncharacterized protein.	0.949
F6SF30_CIOIN	F7BBD1_CIOIN	ENSCINP00000000705	ENSCINP00000018578	Uncharacterized protein.	Uncharacterized protein.	0.998
F6SF30_CIOIN	LOC100186999	ENSCINP00000000705	ENSCINP00000012258	Uncharacterized protein.	Uncharacterized protein.	0.998
F6SF30_CIOIN	LOC100187049	ENSCINP00000000705	ENSCINP00000014202	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.807
F6SF30_CIOIN	SSRP1	ENSCINP00000000705	ENSCINP00000000932	Uncharacterized protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.680
F6SF30_CIOIN	cnot7/8	ENSCINP00000000705	ENSCINP00000006096	Uncharacterized protein.	Ci-CNOT7/8 protein.	0.948