Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
zf(dhhc)-1Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (355 aa)    
Predicted Functional Partners:
F6YSQ6_CIOIN
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
     
 0.672
LOC100177362
Palmitoyl-protein thioesterase 1.
   
  
 0.553
LOC100179894
Werner syndrome ATP-dependent helicase homolog isoform X1.
    
 
 0.543
H2XKT2_CIOIN
3'-5' exonuclease domain-containing protein.
    
 
 0.543
zf(ring)-26
Zinc finger protein isoform X2.
    
 
 0.518
zf(c3h)-2
Zinc finger CCCH domain-containing protein 15.
      
 0.515
F6XS68_CIOIN
Uncharacterized protein.
      
 0.510
F6WEI4_CIOIN
MRG domain-containing protein.
      
 0.492
LOC100178759
Uncharacterized protein.
      
 0.492
F6ZN89_CIOIN
Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.
    
 
 0.482
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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