Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
F6VTD9_CIOINAB hydrolase-1 domain-containing protein. (337 aa)    
Predicted Functional Partners:
zf(ring)-30
Zinc finger protein.
      
 0.493
F6S2A1_CIOIN
Uncharacterized protein.
    
 0.435
LOC100181886
Peroxisomal membrane protein 4-like.
   
  
 0.431
gsc
Transcription factor protein.
    
 
 0.428
zf(c2h2)-86
Spliceosome-associated protein CWC15 homolog.
      
 0.424
F6XBY1_CIOIN
ACB domain-containing protein.
   
 0.422
F6WQJ7_CIOIN
Uncharacterized protein.
   
 0.422
F7A8X9_CIOIN
Uncharacterized protein.
   
 0.422
H2XMN5_CIOIN
Uncharacterized protein.
   
 0.422
H2Y1K1_CIOIN
ACB domain-containing protein.
   
 0.422
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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