gsc protein (Ciona intestinalis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

gsc

Transcription factor protein. (257 aa)

Predicted Functional Partners:

tardbp

0.919

F6U182_CIOIN

0.919

tektinB1

0.919

LOC100180447

0.919

LOC100182411

0.919

H2XL75_CIOIN

0.919

H2XX34_CIOIN

0.919

ci-zf(c3h)-7

0.919

tbx20

0.905

Nkx-c

0.894

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U182_CIOIN	gsc	ENSCINP00000013624	ENSCINP00000012397	Uncharacterized protein.	Transcription factor protein.	0.919
H2XL75_CIOIN	Nkx-c	ENSCINP00000030407	ENSCINP00000004162	Uncharacterized protein.	Homeobox domain-containing protein.	0.891
H2XL75_CIOIN	gsc	ENSCINP00000030407	ENSCINP00000012397	Uncharacterized protein.	Transcription factor protein.	0.919
H2XX34_CIOIN	gsc	ENSCINP00000034218	ENSCINP00000012397	Uncharacterized protein.	Transcription factor protein.	0.919
LOC100180447	gsc	ENSCINP00000025778	ENSCINP00000012397	Rab11 family-interacting protein 3-like.	Transcription factor protein.	0.919
LOC100182411	gsc	ENSCINP00000030064	ENSCINP00000012397	WD_REPEATS_REGION domain-containing protein.	Transcription factor protein.	0.919
Nkx-c	H2XL75_CIOIN	ENSCINP00000004162	ENSCINP00000030407	Homeobox domain-containing protein.	Uncharacterized protein.	0.891
Nkx-c	gsc	ENSCINP00000004162	ENSCINP00000012397	Homeobox domain-containing protein.	Transcription factor protein.	0.894
Nkx-c	tbx20	ENSCINP00000004162	ENSCINP00000010822	Homeobox domain-containing protein.	Uncharacterized protein.	0.748
Nkx-c	tektinB1	ENSCINP00000004162	ENSCINP00000015193	Homeobox domain-containing protein.	Tektin B1.	0.891
ci-zf(c3h)-7	gsc	ENSCINP00000034981	ENSCINP00000012397	Uncharacterized protein.	Transcription factor protein.	0.919
gsc	F6U182_CIOIN	ENSCINP00000012397	ENSCINP00000013624	Transcription factor protein.	Uncharacterized protein.	0.919
gsc	H2XL75_CIOIN	ENSCINP00000012397	ENSCINP00000030407	Transcription factor protein.	Uncharacterized protein.	0.919
gsc	H2XX34_CIOIN	ENSCINP00000012397	ENSCINP00000034218	Transcription factor protein.	Uncharacterized protein.	0.919
gsc	LOC100180447	ENSCINP00000012397	ENSCINP00000025778	Transcription factor protein.	Rab11 family-interacting protein 3-like.	0.919
gsc	LOC100182411	ENSCINP00000012397	ENSCINP00000030064	Transcription factor protein.	WD_REPEATS_REGION domain-containing protein.	0.919
gsc	Nkx-c	ENSCINP00000012397	ENSCINP00000004162	Transcription factor protein.	Homeobox domain-containing protein.	0.894
gsc	ci-zf(c3h)-7	ENSCINP00000012397	ENSCINP00000034981	Transcription factor protein.	Uncharacterized protein.	0.919
gsc	tardbp	ENSCINP00000012397	ENSCINP00000000071	Transcription factor protein.	Ci-Tardbp protein.	0.919
gsc	tbx20	ENSCINP00000012397	ENSCINP00000010822	Transcription factor protein.	Uncharacterized protein.	0.905