STRINGSTRING
soxB1 protein (Ciona intestinalis) - STRING interaction network
"soxB1" - HMG transcription factor SoxB1 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxB1HMG transcription factor SoxB1 (414 aa)    
Predicted Functional Partners:
ENSCING00000007020
Uncharacterized protein (273 aa)
       
  0.769
CTNNB1
Beta-catenin (497 aa)
       
  0.769
ENSCING00000012142
Zinc finger protein (481 aa)
       
  0.701
pax6
Homeobox transcription factor Pax6 (497 aa)
       
 
  0.673
ENSCING00000024084
Zinc finger protein ZF(CCHC)-17 (194 aa)
     
  0.628
bsh
Uncharacterized protein (370 aa)
     
  0.620
pax3/7
Uncharacterized protein (673 aa)
       
 
  0.584
cdx
Transcription factor protein (394 aa)
       
 
  0.574
if-d
Intermediate filament protein IF-D (439 aa)
     
   
  0.550
FGF13
Fibroblast growth factor 11/12/13/14 (182 aa)
         
  0.536
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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