STRINGSTRING
chordin protein (Ciona intestinalis) - STRING interaction network
"chordin" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chordinUncharacterized protein (388 aa)    
Predicted Functional Partners:
ENSCING00000022945
Uncharacterized protein (229 aa)
 
       
  0.694
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
       
  0.683
ENSCING00000023715
Uncharacterized protein (251 aa)
 
            0.667
nodal
Transforming growth factor beta superfamily signaling ligand precursor (415 aa)
       
  0.581
ENSCING00000003777
Transforming growth factor beta superfamily signaling ligand (660 aa)
       
  0.452
ENSCING00000009577
Uncharacterized protein (233 aa)
           
  0.448
ENSCING00000013600
Transforming growth factor beta superfamily signaling ligand precursor (492 aa)
       
    0.417
tgfbeta2
Transforming growth factor beta superfamily signaling ligand precursor (435 aa)
       
    0.417
ENSCING00000008562
Transforming growth factor beta superfamily signaling ligand precursor (385 aa)
       
    0.417
bmp3
Transforming growth factor beta superfamily signaling ligand precursor (669 aa)
       
    0.417
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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