STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6T2W0_CIOINUncharacterized protein. (388 aa)    
Predicted Functional Partners:
bmp5/7-like
Transforming growth factor beta superfamily signaling ligand isoform X1.
    
 0.958
F6SGS4_CIOIN
Uncharacterized protein.
 
     0.943
Bmp2/4
TGFb_propeptide domain-containing protein.
    
 
 0.780
LOC100178002
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
      
 0.649
Tolloid
Metalloendopeptidase.
    
 
 0.640
H2Y0M3_CIOIN
CHRD domain-containing protein.
 
     0.573
noggin
Noggin protein precursor.
      
 0.571
Fgf9/16/20
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.563
brachyury
Uncharacterized protein.
      
 0.521
smad4
Mothers against decapentaplegic homolog.
    
 
 0.518
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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