Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6T2W0_CIOINUncharacterized protein. (388 aa)    
Predicted Functional Partners:
bmp5/7-like
Transforming growth factor beta superfamily signaling ligand isoform X1.
    
 0.958
F6SGS4_CIOIN
Uncharacterized protein.
 
     0.943
Bmp2/4
TGFb_propeptide domain-containing protein.
    
 
 0.902
tgfbeta-na4
TGF_BETA_2 domain-containing protein.
    
 
 0.676
LOC100176536
Uncharacterized protein.
    
 
 0.670
noggin
Noggin protein precursor.
      
 0.609
Tolloid
Metalloendopeptidase.
    
 
 0.591
LOC778850
Zinc finger protein.
    
 
 0.590
H2Y0M3_CIOIN
CHRD domain-containing protein.
 
     0.573
gsc
Transcription factor protein.
      
 0.550
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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