Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6SFB8_CIOINUncharacterized protein. (493 aa)    
Predicted Functional Partners:
LOC100181593
Vesicle-associated membrane protein-associated protein B-like.
    
 
 0.943
F6SSH7_CIOIN
START domain-containing protein.
      
 0.808
F6YDB9_CIOIN
START domain-containing protein.
      
 0.766
F6QS67_CIOIN
START domain-containing protein.
      
 0.743
bco
Uncharacterized protein.
      
 0.742
LOC100185535
Motile sperm domain-containing protein 2.
    
 
 0.702
H2Y0K8_CIOIN
Uncharacterized protein.
    
 
 0.702
F6YFR8_CIOIN
Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family.
   
  
 0.682
F6RXC5_CIOIN
Uncharacterized protein.
      
 0.668
F6VHE0_CIOIN
Uncharacterized protein.
      
 0.626
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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