Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6V396_CIOINBTB domain-containing protein. (465 aa)    
Predicted Functional Partners:
nf-e2
BZIP domain-containing protein.
    
 0.707
F6R472_CIOIN
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.690
H2XUY6_CIOIN
Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.
    
 0.690
LOC100182516
RING-box protein 1.
    
 0.684
LOC100175568
BTB domain-containing protein.
  
  
  0.580
F6UQ26_CIOIN
Uncharacterized protein.
  
 
  0.570
F6Z1B1_CIOIN
Uncharacterized protein.
  
 
  0.567
F6W9U8_CIOIN
PB1 domain-containing protein.
    
 0.559
LOC100184598
Sequestosome-1 isoform X1.
    
 0.559
LOC100175581
Uncharacterized protein LOC100175581.
    
 0.559
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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