Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180771Protein FAM72A-like. (150 aa)    
Predicted Functional Partners:
Zf(c2h2)-114
General transcription factor IIH subunit.
      
 0.653
LOC100185658
Kinetochore protein NDC80 homolog.
   
    0.625
LOC100176899
Protein kinase domain-containing protein.
   
    0.616
H2XTT8_CIOIN
Uncharacterized protein; Belongs to the BolA/IbaG family.
      
 0.584
H2XVA3_CIOIN
Myotubularin phosphatase domain-containing protein.
      
 0.512
H2Y0Z3_CIOIN
Rho-GAP domain-containing protein.
   
  
 0.487
LOC100176117
Uncharacterized protein LOC100176117.
   
    0.465
H2XTY4_CIOIN
Uncharacterized protein.
   
    0.465
LOC100179846
Lymphokine-activated killer T-cell-originated protein kinase isoform X1.
   
    0.453
F6TSN4_CIOIN
Uncharacterized protein.
      
 0.445
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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