Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zf(ring)-30Zinc finger protein. (645 aa)    
Predicted Functional Partners:
LOC100182606
Uncharacterized protein.
    
 0.993
F7ANR5_CIOIN
CPSF_A domain-containing protein.
    
 0.979
LOC100175879
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.957
Erm/er81
ETS domain-containing protein.
    
 
 0.954
H2XWX0_CIOIN
Protein kinase domain-containing protein.
    
   0.953
LOC100182516
RING-box protein 1.
    
 0.951
ckn1
Cockayne syndrome 1 homolog.
     
0.938
F7B5N7_CIOIN
Protein kinase domain-containing protein.
    
 
 0.927
jun
Transcription factor protein.
    
 
 0.921
F7B3P4_CIOIN
Uncharacterized protein.
     
 0.835
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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