Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7B1Z2_CIOINUncharacterized protein. (355 aa)    
Predicted Functional Partners:
F6TNN9_CIOIN
Uncharacterized protein.
  
  
 
0.908
F6Z145_CIOIN
Uncharacterized protein.
  
  
 
0.902
F6SFJ3_CIOIN
Uncharacterized protein.
     
  0.900
F6X134_CIOIN
Uncharacterized protein.
   
 0.888
F6X5R6_CIOIN
Uncharacterized protein.
   
 0.815
F7AM07_CIOIN
RRM domain-containing protein.
  
 0.749
F6YF53_CIOIN
RRM domain-containing protein.
  
  0.685
H2Y233_CIOIN
Nuclear cap-binding protein subunit 2.
  
 0.673
F7AEP7_CIOIN
RRM domain-containing protein.
   
 0.669
F6PKJ4_CIOIN
MIF4G domain-containing protein.
    
 0.668
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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