Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100176076Uncharacterized protein LOC100176076. (657 aa)    
Predicted Functional Partners:
F6WUJ1_CIOIN
Structural maintenance of chromosomes protein.
   
 0.994
LOC100175748
SCD domain-containing protein.
   
 0.970
F7AQS5_CIOIN
Peptidase C50 domain-containing protein.
   
 0.925
LOC100180856
Rad21_Rec8 domain-containing protein.
    
 0.888
F6SH99_CIOIN
SMC hinge domain-containing protein.
   
 0.883
H2XVQ7_CIOIN
WAPL domain-containing protein.
    
 0.883
LOC100187231
Synaptonemal complex protein 3-like.
    
 0.874
LOC100180409
Meiotic recombination protein SPO11.
    
 
 0.871
F6SVB2_CIOIN
Acetyltransf_13 domain-containing protein.
   
 0.862
H2Y1G6_CIOIN
SMC_N domain-containing protein.
   
 0.850
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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