Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ci-morn40Radial spoke protein MORN40. (300 aa)    
Predicted Functional Partners:
ci-rsp4/6
Radial spoke protein RSP4/6.
   
 
 0.986
ci-rsp9
Radial spoke protein Ci-RSP9.
   
 
 0.983
Rsp3
Uncharacterized protein.
   
 
 0.960
LOC100182527
MORN repeat-containing protein 3-like.
  
  
0.909
LOC100177874
Dynein regulatory complex subunit 2 isoform X2.
   
 
 0.903
Ic1
Uncharacterized protein.
   
 
 0.897
LOC100182997
33 kDa inner dynein arm light chain, axonemal.
   
 
 0.889
LOC100175445
Uncharacterized protein.
   
 
 0.883
LOC778840
WD_REPEATS_REGION domain-containing protein.
   
 
 0.872
ci-cmub116
Radial spoke protein CMUB116.
   
 
 0.857
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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